histopath_bim_des.config package

Submodules

• histopath_bim_des.config.arrivals module
  • ArrivalSchedule
    • ArrivalSchedule.rates
    • ArrivalSchedule.from_pd()
  • ArrivalSchedules
    • ArrivalSchedules.cancer
    • ArrivalSchedules.noncancer
    • ArrivalSchedules.from_workbook()
• histopath_bim_des.config.batching module
  • BatchSizes
    • BatchSizes.deliver_reception_to_cut_up
    • BatchSizes.deliver_cut_up_to_processing
    • BatchSizes.deliver_processing_to_microtomy
    • BatchSizes.deliver_microtomy_to_staining
    • BatchSizes.deliver_staining_to_labelling
    • BatchSizes.deliver_labelling_to_scanning
    • BatchSizes.deliver_scanning_to_qc
    • BatchSizes.bone_station
    • BatchSizes.processing_regular
    • BatchSizes.processing_megas
    • BatchSizes.staining_regular
    • BatchSizes.staining_megas
    • BatchSizes.digital_scanning_regular
    • BatchSizes.digital_scanning_megas
    • BatchSizes.from_workbook()
• histopath_bim_des.config.config module
  • Config
    • Config.arrivals
    • Config.batch_sizes
    • Config.global_vars
    • Config.resources
    • Config.runner_times
    • Config.task_durations
    • Config.sim_hours
    • Config.num_reps
    • Config.from_workbook()
• histopath_bim_des.config.distributions module
  • DistributionInfo
    • DistributionInfo.type
    • DistributionInfo.low
    • DistributionInfo.mode
    • DistributionInfo.high
    • DistributionInfo.time_unit
  • IntDistributionInfo
    • IntDistributionInfo.type
    • IntDistributionInfo.low
    • IntDistributionInfo.mode
    • IntDistributionInfo.high
• histopath_bim_des.config.global_vars module
  • Globals
    • Globals.prob_internal
    • Globals.prob_urgent_cancer
    • Globals.prob_urgent_non_cancer
    • Globals.prob_priority_cancer
    • Globals.prob_priority_non_cancer
    • Globals.prob_prebook
    • Globals.prob_invest_easy
    • Globals.prob_invest_hard
    • Globals.prob_invest_external
    • Globals.prob_bms_cutup
    • Globals.prob_bms_cutup_urgent
    • Globals.prob_large_cutup
    • Globals.prob_large_cutup_urgent
    • Globals.prob_pool_cutup
    • Globals.prob_pool_cutup_urgent
    • Globals.prob_mega_blocks
    • Globals.prob_decalc_bone
    • Globals.prob_decalc_oven
    • Globals.prob_microtomy_levels
    • Globals.num_blocks_large_surgical
    • Globals.num_blocks_mega
    • Globals.num_slides_larges
    • Globals.num_slides_levels
    • Globals.num_slides_megas
    • Globals.num_slides_serials
    • Globals.from_workbook()
• histopath_bim_des.config.resources module
  • ResourceSchedule
    • ResourceSchedule.day_flags
    • ResourceSchedule.allocation
    • ResourceSchedule.from_pd()
  • ResourceInfo
    • ResourceInfo.name
    • ResourceInfo.type
    • ResourceInfo.schedule
  • ResourcesInfo
    • ResourcesInfo.booking_in_staff
    • ResourcesInfo.bms
    • ResourcesInfo.cut_up_assistant
    • ResourcesInfo.processing_room_staff
    • ResourcesInfo.microtomy_staff
    • ResourcesInfo.staining_staff
    • ResourcesInfo.scanning_staff
    • ResourcesInfo.qc_staff
    • ResourcesInfo.histopathologist
    • ResourcesInfo.bone_station
    • ResourcesInfo.processing_machine
    • ResourcesInfo.staining_machine
    • ResourcesInfo.coverslip_machine
    • ResourcesInfo.scanning_machine_regular
    • ResourcesInfo.scanning_machine_megas
    • ResourcesInfo.from_workbook()
• histopath_bim_des.config.runners module
  • ProcessDoorMap
    • ProcessDoorMap.reception
    • ProcessDoorMap.cutup
    • ProcessDoorMap.processing
    • ProcessDoorMap.microtomy
    • ProcessDoorMap.staining
    • ProcessDoorMap.labelling
    • ProcessDoorMap.scanning
    • ProcessDoorMap.qc
  • PathDefinition
    • PathDefinition.path
    • PathDefinition.duration_seconds
  • RunnerExtraDurations
    • RunnerExtraDurations.loading_time
    • RunnerExtraDurations.unloading_time
  • RunnerConfig
    • RunnerConfig.door_map
    • RunnerConfig.runner_speed
    • RunnerConfig.cutup_dist
    • RunnerConfig.extra_paths
    • RunnerConfig.extra_durations
    • RunnerConfig.from_excel()
  • RunnerTimesConfig
    • RunnerTimesConfig.reception_cutup
    • RunnerTimesConfig.cutup_processing
    • RunnerTimesConfig.processing_microtomy
    • RunnerTimesConfig.microtomy_staining
    • RunnerTimesConfig.staining_labelling
    • RunnerTimesConfig.labelling_scanning
    • RunnerTimesConfig.scanning_qc
    • RunnerTimesConfig.extra_loading
    • RunnerTimesConfig.extra_unloading
    • RunnerTimesConfig.from_workbook()
• histopath_bim_des.config.tasks module
  • TaskDurationsInfo
    • TaskDurationsInfo.receive_and_sort
    • TaskDurationsInfo.pre_booking_in_investigation
    • TaskDurationsInfo.booking_in_internal
    • TaskDurationsInfo.booking_in_external
    • TaskDurationsInfo.booking_in_investigation_internal_easy
    • TaskDurationsInfo.booking_in_investigation_internal_hard
    • TaskDurationsInfo.booking_in_investigation_external
    • TaskDurationsInfo.cut_up_bms
    • TaskDurationsInfo.cut_up_pool
    • TaskDurationsInfo.cut_up_large_specimens
    • TaskDurationsInfo.load_bone_station
    • TaskDurationsInfo.decalc
    • TaskDurationsInfo.unload_bone_station
    • TaskDurationsInfo.load_into_decalc_oven
    • TaskDurationsInfo.unload_from_decalc_oven
    • TaskDurationsInfo.load_processing_machine
    • TaskDurationsInfo.unload_processing_machine
    • TaskDurationsInfo.processing_urgent
    • TaskDurationsInfo.processing_small_surgicals
    • TaskDurationsInfo.processing_large_surgicals
    • TaskDurationsInfo.processing_megas
    • TaskDurationsInfo.embedding
    • TaskDurationsInfo.embedding_cooldown
    • TaskDurationsInfo.block_trimming
    • TaskDurationsInfo.microtomy_serials
    • TaskDurationsInfo.microtomy_levels
    • TaskDurationsInfo.microtomy_larges
    • TaskDurationsInfo.microtomy_megas
    • TaskDurationsInfo.load_staining_machine_regular
    • TaskDurationsInfo.load_staining_machine_megas
    • TaskDurationsInfo.staining_regular
    • TaskDurationsInfo.staining_megas
    • TaskDurationsInfo.unload_staining_machine_regular
    • TaskDurationsInfo.unload_staining_machine_megas
    • TaskDurationsInfo.load_coverslip_machine_regular
    • TaskDurationsInfo.coverslip_regular
    • TaskDurationsInfo.coverslip_megas
    • TaskDurationsInfo.unload_coverslip_machine_regular
    • TaskDurationsInfo.labelling
    • TaskDurationsInfo.load_scanning_machine_regular
    • TaskDurationsInfo.load_scanning_machine_megas
    • TaskDurationsInfo.scanning_regular
    • TaskDurationsInfo.scanning_megas
    • TaskDurationsInfo.unload_scanning_machine_regular
    • TaskDurationsInfo.unload_scanning_machine_megas
    • TaskDurationsInfo.block_and_quality_check
    • TaskDurationsInfo.assign_histopathologist
    • TaskDurationsInfo.write_report
    • TaskDurationsInfo.from_workbook()

Module contents

Module containing configuration dataclasses for the histopathology simulation module.